Pyfaidx Versions Save

This is a minor correction to the bgzip example from #216. Thanks @jmarshall!

What's Changed

• Better message about bgzip compression errors: Update init.py by @rraadd88 in https://github.com/mdshw5/pyfaidx/pull/216

New Contributors

• @rraadd88 made their first contribution in https://github.com/mdshw5/pyfaidx/pull/216

Full Changelog: https://github.com/mdshw5/pyfaidx/compare/v0.8.0...v0.8.1

What's Changed

• remove old Python 2 hybridation by @a-detiste in https://github.com/mdshw5/pyfaidx/pull/215
• This release drops support for Python 2. If you need to use this module with a Python 2 interpreter, please use a version from 0.7 or earlier!

New Contributors

• @a-detiste made their first contribution in https://github.com/mdshw5/pyfaidx/pull/215

Full Changelog: https://github.com/mdshw5/pyfaidx/compare/v0.7.2.2...v0.8.0

What's Changed

• Update codecov action by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/210
• Replace usage of pkg_resources API by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/213

Full Changelog: https://github.com/mdshw5/pyfaidx/compare/v0.7.2.1...v0.7.2.2

What's Changed

• missing setuptools dependency in v0.7.2 by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/207

Full Changelog: https://github.com/mdshw5/pyfaidx/compare/v0.7.2...v0.7.2.1

What's Changed

• Add use case for indexing FASTA with suppressed output by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/198
• Update python versions in CI by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/197
• fix bgzf test failure with biopython 1.80 by @emollier in https://github.com/mdshw5/pyfaidx/pull/199
• Switch to pyproject.toml by @marcelm in https://github.com/mdshw5/pyfaidx/pull/200
• fix ResourceWarning: unclosed file by @siebrenf in https://github.com/mdshw5/pyfaidx/pull/202
• Move the --invert-match example to the top by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/204
• 'Sequence.gc' Method for IUPAC bases by @Bardia-Masudy in https://github.com/mdshw5/pyfaidx/pull/205

New Contributors

• @emollier made their first contribution in https://github.com/mdshw5/pyfaidx/pull/199
• @siebrenf made their first contribution in https://github.com/mdshw5/pyfaidx/pull/202
• @Bardia-Masudy made their first contribution in https://github.com/mdshw5/pyfaidx/pull/205

Full Changelog: https://github.com/mdshw5/pyfaidx/compare/v0.7.1...v0.7.2

What's Changed

• pathlib.Path can be passed to Fasta and Faidx by @palao in https://github.com/mdshw5/pyfaidx/pull/184
• Bump minimum python to 3.7 by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/195
• fix: remove seemingly superfluous import of pysam by @johanneskoester in https://github.com/mdshw5/pyfaidx/pull/194
• Merge changes from #184 to release by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/196

New Contributors

• @palao made their first contribution in https://github.com/mdshw5/pyfaidx/pull/184
• @johanneskoester made their first contribution in https://github.com/mdshw5/pyfaidx/pull/194

Full Changelog: https://github.com/mdshw5/pyfaidx/compare/v0.7.0...v0.7.1

What's Changed

• Add acidbio/bed tests by @mdshw5 in https://github.com/mdshw5/pyfaidx/pull/188
• Minor change in pytest xfail usage in tests by @ap-- in https://github.com/mdshw5/pyfaidx/pull/191
• Add fsspec support by @ap-- in https://github.com/mdshw5/pyfaidx/pull/190
• Implement fsspec handling for indexname by @ap-- in https://github.com/mdshw5/pyfaidx/pull/193

New Contributors

• @ap-- made their first contribution in https://github.com/mdshw5/pyfaidx/pull/191

Full Changelog: https://github.com/mdshw5/pyfaidx/compare/v0.6.4...v0.7.0

• Migrated test suite from nose to pytest
• Removed some deprecated function calls (#185)
• Added support for pathlib.Path (#184)

• Removes large test data accidentally added in last release