RadonPy is a Python library to automate physical property calculations for polymer informatics.
Future expansion: switching QM solvers Future expansion: switching force field Improvement: RESP calculations can be performed for all elements Fix: undefined variable in error messages of radonpy.sim.helper Fix: undefined variable in radonpy.sim.lammps.MolToLAMMPSdataBlock
Implementation: read and write functions of a JSON file Implementation: IO helper functions for pipe-lining scripts Improvement: update sample scripts Bug fix: efield and dipole LAMMPS commands
Enhancement: compatible for Python 3.11 Enhancement: compatible for Psi4 1.8 Enhancement: compatible for LAMMPS-23Jun2022 Bug fix: optimization convergence error had occur due to the scratch file of optimization remaining. Bug fix: undefined variable in sim.psi4_wrapper.Psi4w.scan
Enhancement: convergence of DFT optimization in the molecules having a linear angle. Enhancement: changing behavior of psi4_mp=1 in conformation_search to avoid out of memory during psi4 running. Enhancement: changing behavior of mp=1 in polarizability calculation to avoid out of memory during psi4 running. Bug fix: for sample scripts
Implementation: reverse resolution of the Force Field Descriptors Implementation: MIC computation and visualization for the Force Field Descriptors Implementation: function of extracting side chains from SMILES (poly.extract_sidechain) Improvement: new interface of the Force Field Descriptors Improvement: some improvement are imported from v0.2.3-v0.2.5 Change: default value of polar in Force Field Descriptors is changed to True Change: default value of sigma in the Force Field Descriptor with kernel mean is changed to 1/nk/sqrt(2) Change: default value of stats in the Force Field Descriptor with summary statistics is changed to ['mean', 'std', 'max', 'min'] Bug fix: some bug fixes are imported from v0.2.3-v0.2.5 Bug fix: behavior of poly.terminate_rw when H is entered in mol1
Improvement: added switching of the append keyword in the LAMMPS log file.
psi4_wrapper.Psi4w.cc2_polar
.poly.polyinfo_classifier
caused an error.utils.mol_from_smiles
.poly.substruct_match_smiles_list
.0
and 1
.