StructuralIdentifiability.jl Versions Save

StructuralIdentifiability v0.4.15

Diff since v0.4.14

Merged pull requests:

• Discrete docs (#238) (@pogudingleb)
• Adding log levels to the functions and using internal logger (#241) (@pogudingleb)
• CompatHelper: add new compat entry for TimerOutputs at version 0.5, (keep existing compat) (#245) (@github-actions[bot])

Closed issues:

• MTK and SI ODEs have different formats for variable identifability (#242)

StructuralIdentifiability v0.4.14

Diff since v0.4.13

Merged pull requests:

• Change typeof(x) <: y to x isa y (#228) (@pepijndevos)
• Fix for ODEs with no parameters (#229) (@sumiya11)
• Being more concise in logging (#230) (@sumiya11)
• keeping the variable ordering when computing submodels (#232) (@pogudingleb)
• Update identifiability.md (#233) (@TorkelE)
• Add a docstring for reparametrization (#234) (@sumiya11)

Closed issues:

• Cannot find PreprocessODE function (#224)
• Problem createing StructuralIdentifiability ODE from certain system (#227)
• Output from preprocess_ode generates erro when given to e.g. assess_identifiability (#231)

StructuralIdentifiability v0.4.13

Diff since v0.4.12

Merged pull requests:

• Fix deployment of stable docs (#226) (@sumiya11)

Closed issues:

• Using set_parameter_values with ModelingToolkit type models (#225)

StructuralIdentifiability v0.4.12

Diff since v0.4.11

Merged pull requests:

• CompatHelper: bump compat for Nemo to 0.37, (keep existing compat) (#217) (@github-actions[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.33, (keep existing compat) (#218) (@github-actions[bot])
• Bump Groebner 0.5 & run CI (#220) (@sumiya11)
• Abstract the saturation variable index (#222) (@sumiya11)

Closed issues:

• Problem when trying to asses identifiability of ModelingToolkit and setting observables using measured_quantities kwarg. (#223)

StructuralIdentifiability v0.4.11

Diff since v0.4.10

Merged pull requests:

• Copy of Alex's "minor improvement" (#184) (@pogudingleb)
• Copy of "Add precompilation" (#186) (@pogudingleb)
• CompatHelper: bump compat for Nemo to 0.35, (keep existing compat) (#191) (@github-actions[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.31, (keep existing compat) (#192) (@github-actions[bot])
• Interface id funcs (#193) (@pogudingleb)
• Propagating the bug fix (#194) (@pogudingleb)
• Computing really all identifiable functions (#195) (@sumiya11)
• add some minor fixes & comments (#196) (@pogudingleb)
• update benchmarks (#197) (@pogudingleb)
• Ident funcs 3 (#198) (@pogudingleb)
• CompatHelper: bump compat for Groebner to 0.4, (keep existing compat) (#199) (@github-actions[bot])
• Ident funcs 3 (#201) (@pogudingleb)
• Ident funcs 3 (#202) (@pogudingleb)
• Ident funcs 3 (#203) (@pogudingleb)
• Ident funcs 3 (#204) (@pogudingleb)
• Ident funcs 3 (#205) (@pogudingleb)
• Ident funcs 3 (#206) (@pogudingleb)
• Fix one bug (#207) (@pogudingleb)
• Bump actions/checkout from 3 to 4 (#208) (@dependabot[bot])
• CompatHelper: bump compat for Nemo to 0.36, (keep existing compat) (#210) (@github-actions[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.32, (keep existing compat) (#211) (@github-actions[bot])
• CompatHelper: bump compat for Documenter to 1 for package docs, (keep existing compat) (#212) (@github-actions[bot])
• CompatHelper: add new compat entry for ParamPunPam at version 0.1, (keep existing compat) (#213) (@github-actions[bot])
• CompatHelper: add new compat entry for Combinatorics at version 1, (keep existing compat) (#214) (@github-actions[bot])
• CompatHelper: add new compat entry for StructuralIdentifiability at version 0.4 for package docs, (keep existing compat) (#215) (@github-actions[bot])

Closed issues:

• Advice on getting global identifiabiltiy to work for a relatively small (?) system (#189)
• Error when attempting identifiability analysis on system with parameter in exponent. (#190)
• ModelingToolkit Workflow only returns Parameter Identifiability (#200)

StructuralIdentifiability v0.4.10

Diff since v0.4.9

Closed issues:

• Initial conditions (#137)
• Structural identifiability analysis fails for composed MTK model (#162)
• Spelling error in documentation (#171)
• Support for tensor definition, as per Symbolics.jl, of variables (#178)

Merged pull requests:

• Composable more (#167) (@pogudingleb)
• CompatHelper: bump compat for AbstractAlgebra to 0.30, (keep existing compat) (#170) (@github-actions[bot])
• Update pages.jl (#172) (@ChrisRackauckas)
• CompatHelper: bump compat for Nemo to 0.34, (keep existing compat) (#173) (@github-actions[bot])
• Local identifiability for discrete-time systems (#176) (@pogudingleb)
• Allowing not to give names to the output functions in the MTK format (#177) (@pogudingleb)
• Vector representation used in MTK input format (#180) (@pogudingleb)
• Checking variable names in the ODE macros (#181) (@pogudingleb)

StructuralIdentifiability v0.4.9

Diff since v0.4.8

Closed issues:

• Stuck at "Computing IO-equations" (#132)
• Structural identifiability analysis fails for composed MTK model (#162)

Merged pull requests:

• Fix for composable MTK models (#165) (@pogudingleb)
• Avoid factoring (#166) (@pogudingleb)

StructuralIdentifiability v0.4.8

Diff since v0.4.7

Merged pull requests:

• Add custom formatter, short_to_long_function_def is false (#152) (@ArnoStrouwen)
• CompatHelper: bump compat for AbstractAlgebra to 0.28, (keep existing compat) (#153) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.33, (keep existing compat) (#154) (@github-actions[bot])
• enable dependabot for GitHub actions (#157) (@ranocha)
• Bump actions/checkout from 1 to 3 (#158) (@dependabot[bot])
• Bump actions/cache from 1 to 3 (#159) (@dependabot[bot])
• Bump codecov/codecov-action from 1 to 3 (#160) (@dependabot[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.29, (keep existing compat) (#161) (@github-actions[bot])
• fixing base_ring issue (#163) (@pogudingleb)
• Fixing the case with submodel without states (output is a scalar) (#164) (@pogudingleb)

StructuralIdentifiability v0.4.7

Diff since v0.4.6

Merged pull requests:

• CompatHelper: bump compat for Groebner to 0.3, (keep existing compat) (#150) (@github-actions[bot])
• New version (#151) (@iliailmer)

StructuralIdentifiability v0.4.6

Diff since v0.4.5

Closed issues:

• Replacing GroebnerBasis with msolve (#55)
• Identifiability from ODEProblem defined via function (#92)
• Identifiability of ModelingToolkit models (#128)
• Function exp is not supported (#139)
• Global identifiability does not work properly (#142)
• ode for input (#143)
• expression which is not an ODE (#145)
• SymbolicUtils v1 upgrade (#146)

Merged pull requests:

• Update to new version of SymbolicsUtils based on Ilia's code (#149) (@pogudingleb)